HL_8OJ5_038

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8OJ5|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ5_038 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0752

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OJ5|1|5|U|2810
8OJ5|1|5|G|2811
8OJ5|1|5|A|2812
8OJ5|1|5|A|2813
8OJ5|1|5|C|2814
8OJ5|1|5|A|2815
8OJ5|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19