HL_8OJ5_046

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8OJ5|1|5|A|3876, 8OJ5|1|5|A|3877, 8OJ5|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OJ5_046 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0864

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8OJ5|1|5|G|3873
8OJ5|1|5|G|3874
8OJ5|1|5|G|3875
8OJ5|1|5|A|3876
8OJ5|1|5|A|3877
8OJ5|1|5|C|3878
8OJ5|1|5|G|3879
8OJ5|1|5|G|3880
8OJ5|1|5|G|3881
8OJ5|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32