HL_8ONZ_008

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CAGCGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ONZ_008 not in the Motif Atlas

Geometric match to HL_7A0S_001

Geometric discrepancy: 0.2201

The information below is about HL_7A0S_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ONZ|1|2|C|47
8ONZ|1|2|A|48
8ONZ|1|2|G|49
8ONZ|1|2|C|50
8ONZ|1|2|G|51
8ONZ|1|2|A|52
8ONZ|1|2|A|53
8ONZ|1|2|A|54
8ONZ|1|2|U|55
8ONZ|1|2|G|56

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L25-like protein

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase