HL_8ONZ_009

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GUGAAUUGCAGAAUUCCGUGAAUC

Length

24 nucleotides

Bulged bases

8ONZ|1|2|C|84, 8ONZ|1|2|U|90

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ONZ_009 not in the Motif Atlas

Homologous match to HL_8C3A_075

Geometric discrepancy: 0.5913

The information below is about HL_8C3A_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07882.1

Basepair signature

cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8ONZ|1|2|G|68
8ONZ|1|2|U|69
8ONZ|1|2|G|70
8ONZ|1|2|A|71
8ONZ|1|2|A|72
8ONZ|1|2|U|73
8ONZ|1|2|U|74
8ONZ|1|2|G|75
8ONZ|1|2|C|76
8ONZ|1|2|A|77
8ONZ|1|2|G|78
8ONZ|1|2|A|79
8ONZ|1|2|A|80
8ONZ|1|2|U|81
8ONZ|1|2|U|82
8ONZ|1|2|C|83
8ONZ|1|2|C|84
8ONZ|1|2|G|85
8ONZ|1|2|U|86
8ONZ|1|2|G|87
8ONZ|1|2|A|88
8ONZ|1|2|A|89
8ONZ|1|2|U|90
8ONZ|1|2|C|91

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain A

Methionine aminopeptidase 2

Chain LY

60S ribosomal protein L26-like protein

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase