HL_8OO0_029

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_029 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2342

The information below is about HL_8C3A_028

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OO0|1|1|U|1250
8OO0|1|1|G|1251
8OO0|1|1|U|1252
8OO0|1|1|A|1253
8OO0|1|1|A|1254
8OO0|1|1|C|1255
8OO0|1|1|A|1256
8OO0|1|1|A|1257

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein

Chain Ls

60S acidic ribosomal protein P0