HL_8OO0_042

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8OO0|1|1|C|1826, 8OO0|1|1|G|1828, 8OO0|1|1|A|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_042 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1235

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8OO0|1|1|C|1824
8OO0|1|1|G|1825
8OO0|1|1|C|1826
8OO0|1|1|A|1827
8OO0|1|1|G|1828
8OO0|1|1|C|1829
8OO0|1|1|A|1830
8OO0|1|1|G|1831

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

60S ribosomal protein L39