HL_8OO0_077

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGAUUC

Length

8 nucleotides

Bulged bases

8OO0|1|2|U|246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_077 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1957

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8OO0|1|2|G|240
8OO0|1|2|G|241
8OO0|1|2|U|242
8OO0|1|2|G|243
8OO0|1|2|A|244
8OO0|1|2|U|245
8OO0|1|2|U|246
8OO0|1|2|C|247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SL

40S ribosomal protein S11-like protein