HL_8OO0_081
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8OO0|1|2|C|399, 8OO0|1|2|G|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_081 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.1241
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OO0|1|2|C|390
8OO0|1|2|C|391
8OO0|1|2|U|392
8OO0|1|2|G|393
8OO0|1|2|A|394
8OO0|1|2|G|395
8OO0|1|2|A|396
8OO0|1|2|A|397
8OO0|1|2|A|398
8OO0|1|2|C|399
8OO0|1|2|G|400
8OO0|1|2|G|401
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SY
- 40S ribosomal protein S24
Coloring options: