HL_8OO0_089

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_089 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1915

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8OO0|1|2|A|827
8OO0|1|2|U|828
8OO0|1|2|U|829
8OO0|1|2|U|830
8OO0|1|2|U|831
8OO0|1|2|G|832
8OO0|1|2|U|833
8OO0|1|2|U|834
8OO0|1|2|G|835
8OO0|1|2|G|836
8OO0|1|2|U|837
8OO0|1|2|U|838
8OO0|1|2|U|839
8OO0|1|2|C|840
8OO0|1|2|U|841

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein