HL_8OO0_097

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8OO0|1|2|G|1240, 8OO0|1|2|G|1242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_097 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2632

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OO0|1|2|A|1235
8OO0|1|2|U|1236
8OO0|1|2|U|1237
8OO0|1|2|G|1238
8OO0|1|2|A|1239
8OO0|1|2|G|1240
8OO0|1|2|A|1241
8OO0|1|2|G|1242
8OO0|1|2|C|1243
8OO0|1|2|U|1244

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein s15-like protein

Chain Sd

40S ribosomal protein S29

Chain Sf

40S ribosomal protein S27a-like protein