HL_8OVE_005

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUUUGG

Length

7 nucleotides

Bulged bases

8OVE|1|AA|U|269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_005 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3144

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8OVE|1|AA|U|224
8OVE|1|AA|C|225
8OVE|1|AA|U|226
8OVE|1|AA|U|227
8OVE|1|AA|U|269
8OVE|1|AA|G|270
8OVE|1|AA|G|271

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A5

40S ribosomal protein S8

Chain Az

RNA-binding protein