HL_8OVE_012

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8OVE|1|AA|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_012 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1365

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8OVE|1|AA|C|507
8OVE|1|AA|U|508
8OVE|1|AA|A|509
8OVE|1|AA|C|510
8OVE|1|AA|G|511
8OVE|1|AA|G|512

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A3

40S ribosomal protein S6

Chain BW

60S ribosomal protein L23, putative

Chain BY

Ribosomal protein L24