HL_8OVE_018

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUCAUGCA

Length

9 nucleotides

Bulged bases

8OVE|1|AA|C|872

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_018 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2054

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OVE|1|AA|U|869
8OVE|1|AA|G|870
8OVE|1|AA|U|871
8OVE|1|AA|C|872
8OVE|1|AA|A|873
8OVE|1|AA|U|874
8OVE|1|AA|G|875
8OVE|1|AA|C|876
8OVE|1|AA|A|877

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A3

40S ribosomal protein S6

Chain Az

RNA-binding protein