HL_8OVE_028

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

8OVE|1|AA|A|1601

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_028 not in the Motif Atlas

Homologous match to HL_8P9A_215

Geometric discrepancy: 0.105

The information below is about HL_8P9A_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8OVE|1|AA|G|1593
8OVE|1|AA|A|1594
8OVE|1|AA|C|1595
8OVE|1|AA|B8N|1596
8OVE|1|AA|C|1597
8OVE|1|AA|A|1598
8OVE|1|AA|A|1599
8OVE|1|AA|C|1600
8OVE|1|AA|A|1601
8OVE|1|AA|C|1602

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A8

Putative ribosomal protein S29

Chain AK

40S ribosomal protein S16, putative

Chain AQ

Ribosomal protein S10