HL_8OVE_031

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUGAUUC

Length

8 nucleotides

Bulged bases

8OVE|1|AA|U|1719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_031 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1467

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OVE|1|AA|G|1714
8OVE|1|AA|U|1715
8OVE|1|AA|U|1716
8OVE|1|AA|G|1717
8OVE|1|AA|A|1718
8OVE|1|AA|U|1719
8OVE|1|AA|U|1720
8OVE|1|AA|C|1721

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AL

40S ribosomal protein S17, putative