HL_8OVE_036
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- A(PSU)UGCAAUUA(OMU)U
- Length
- 12 nucleotides
- Bulged bases
- 8OVE|1|AA|U|2051, 8OVE|1|AA|U|2052, 8OVE|1|AA|A|2053
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_036 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.3167
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OVE|1|AA|A|2044
8OVE|1|AA|PSU|2045
8OVE|1|AA|U|2046
8OVE|1|AA|G|2047
8OVE|1|AA|C|2048
8OVE|1|AA|A|2049
8OVE|1|AA|A|2050
8OVE|1|AA|U|2051
8OVE|1|AA|U|2052
8OVE|1|AA|A|2053
8OVE|1|AA|OMU|2054
8OVE|1|AA|U|2055
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A
- HIS-THR-CYS-THR
- Chain A8
- Putative ribosomal protein S29
- Chain AI
- 40S ribosomal protein S15, putative
- Chain AM
- 40S ribosomal protein S18, putative
- Chain AO
- Ribosomal protein S19, putative
Coloring options: