HL_8OVE_041
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UAAGCA(OMU)A
- Length
- 8 nucleotides
- Bulged bases
- 8OVE|1|BA|A|42
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_041 not in the Motif Atlas
- Geometric match to HL_5TBW_001
- Geometric discrepancy: 0.1015
- The information below is about HL_5TBW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8OVE|1|BA|U|40
8OVE|1|BA|A|41
8OVE|1|BA|A|42
8OVE|1|BA|G|43
8OVE|1|BA|C|44
8OVE|1|BA|A|45
8OVE|1|BA|OMU|46
8OVE|1|BA|A|47
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 60S ribosomal protein L13
- Chain BQ
- Ribosomal protein L15
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bt
- 60S ribosomal protein L44
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