HL_8OVE_046

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AACCCUUCAU

Length

10 nucleotides

Bulged bases

8OVE|1|BA|A|242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_046 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2326

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8OVE|1|BA|A|241
8OVE|1|BA|A|242
8OVE|1|BA|C|243
8OVE|1|BA|C|244
8OVE|1|BA|C|245
8OVE|1|BA|U|246
8OVE|1|BA|U|247
8OVE|1|BA|C|248
8OVE|1|BA|A|249
8OVE|1|BA|U|250

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BG

Large subunit ribosomal RNA; LSU rRNA

Chain BR

60S ribosomal protein L17, putative