HL_8OVE_047

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAAG

Length

5 nucleotides

Bulged bases

8OVE|1|BA|A|266, 8OVE|1|BA|A|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_047 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.1269

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OVE|1|BA|C|264
8OVE|1|BA|A|265
8OVE|1|BA|A|266
8OVE|1|BA|A|267
8OVE|1|BA|G|268

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BZ

60S ribosomal protein L26, putative

Chain Br

60S ribosomal protein L4