HL_8OVE_048
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGUCAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8OVE|1|BA|G|274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_048 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.179
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8OVE|1|BA|G|272
8OVE|1|BA|U|273
8OVE|1|BA|G|274
8OVE|1|BA|U|275
8OVE|1|BA|C|276
8OVE|1|BA|A|277
8OVE|1|BA|G|278
8OVE|1|BA|C|279
8OVE|1|BA|C|280
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BZ
- 60S ribosomal protein L26, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: