HL_8OVE_054

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_054 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3601

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8OVE|1|BA|G|651
8OVE|1|BA|U|652
8OVE|1|BA|G|653
8OVE|1|BA|U|654
8OVE|1|BA|U|675
8OVE|1|BA|C|676

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BU

60S ribosomal protein L21E, putative

Chain Br

60S ribosomal protein L4

Chain Bw

60S ribosomal protein L7, putative