HL_8OVE_064

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8OVE|1|BA|C|1079, 8OVE|1|BA|A|1082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_064 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0537

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OVE|1|BA|C|1078
8OVE|1|BA|C|1079
8OVE|1|BA|U|1080
8OVE|1|BA|C|1081
8OVE|1|BA|A|1082
8OVE|1|BA|G|1083

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain Bb

60S ribosomal protein L27a

Chain Bd

60S ribosomal protein L29

Chain Bt

60S ribosomal protein L44