HL_8OVE_073
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGCACUC
- Length
- 7 nucleotides
- Bulged bases
- 8OVE|1|BA|G|1695, 8OVE|1|BA|U|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_073 not in the Motif Atlas
- Homologous match to HL_8C3A_032
- Geometric discrepancy: 0.2657
- The information below is about HL_8C3A_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8OVE|1|BA|G|1694
8OVE|1|BA|G|1695
8OVE|1|BA|C|1696
8OVE|1|BA|A|1697
8OVE|1|BA|C|1698
8OVE|1|BA|U|1699
8OVE|1|BA|C|1700
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BR
- 60S ribosomal protein L17, putative
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Bq
- 60S ribosomal protein L39, putative
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