HL_8OVE_078

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

8OVE|1|BB|U|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_078 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.072

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

8OVE|1|BB|G|107
8OVE|1|BB|U|108
8OVE|1|BB|U|109
8OVE|1|BB|C|110
8OVE|1|BB|G|111
8OVE|1|BB|C|112

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain Bo

60S ribosomal protein L37a, putative

Chain Bz

Ribosomal protein L41