HL_8OVE_082

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(PSU)AAC(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8OVE|1|BB|A|520, 8OVE|1|BB|C|521, 8OVE|1|BB|A|523

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_082 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3289

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OVE|1|BB|G|517
8OVE|1|BB|PSU|518
8OVE|1|BB|A|519
8OVE|1|BB|A|520
8OVE|1|BB|C|521
8OVE|1|BB|PSU|522
8OVE|1|BB|A|523
8OVE|1|BB|PSU|524
8OVE|1|BB|G|525
8OVE|1|BB|A|526
8OVE|1|BB|C|527

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA