HL_8OVE_086

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUUCGGG

Length

8 nucleotides

Bulged bases

8OVE|1|BB|U|816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_086 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3537

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OVE|1|BB|U|813
8OVE|1|BB|C|814
8OVE|1|BB|U|815
8OVE|1|BB|U|816
8OVE|1|BB|C|817
8OVE|1|BB|G|818
8OVE|1|BB|G|819
8OVE|1|BB|G|820

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain Bx

60S ribosomal protein L7a