HL_8OVE_094
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAACAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 8OVE|1|BB|A|1231
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_094 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.192
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8OVE|1|BB|G|1230
8OVE|1|BB|A|1231
8OVE|1|BB|A|1232
8OVE|1|BB|C|1233
8OVE|1|BB|A|1234
8OVE|1|BB|A|1235
8OVE|1|BB|A|1236
8OVE|1|BB|U|1237
8OVE|1|BB|C|1238
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 60S ribosomal protein L13
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bm
- Ribosomal protein L36, putative
- Chain Bt
- 60S ribosomal protein L44
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