HL_8OVE_102
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGCAAAGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_102 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.1606
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|BC|C|47
8OVE|1|BC|A|48
8OVE|1|BC|G|49
8OVE|1|BC|C|50
8OVE|1|BC|A|51
8OVE|1|BC|A|52
8OVE|1|BC|A|53
8OVE|1|BC|G|54
8OVE|1|BC|U|55
8OVE|1|BC|G|56
Current chains
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- 60S ribosomal protein L23a
- Chain Bk
- 60S ribosomal protein L35, putative
- Chain Bn
- Ribosomal protein L37
- Chain Bq
- 60S ribosomal protein L39, putative
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