HL_8OVE_108
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCUUUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 8OVE|1|BE|U|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_108 not in the Motif Atlas
- Geometric match to HL_5TBW_037
- Geometric discrepancy: 0.1797
- The information below is about HL_5TBW_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|BE|G|54
8OVE|1|BE|C|55
8OVE|1|BE|U|56
8OVE|1|BE|U|57
8OVE|1|BE|U|58
8OVE|1|BE|C|59
8OVE|1|BE|U|60
8OVE|1|BE|U|61
8OVE|1|BE|U|62
Current chains
- Chain BE
- SrRNA 1
Nearby chains
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- SrRNA 4
- Chain BT
- 60S ribosomal protein L19, putative
- Chain BV
- 60S ribosomal protein L22, putative
Coloring options: