HL_8OVE_111

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG

Length

3 nucleotides

Bulged bases

8OVE|1|BF|U|35

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_111 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3992

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OVE|1|BF|C|32
8OVE|1|BF|U|35
8OVE|1|BF|G|36

Current chains

Chain BF

SrRNA 6

Nearby chains

Chain BP

40S ribosomal protein L14, putative

Chain BS

60S ribosomal protein L18a

Chain By

60S ribosomal protein L9, putative