HL_8OVE_112
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUGUGAAGGGA
- Length
- 11 nucleotides
- Bulged bases
- 8OVE|1|BG|U|8, 8OVE|1|BG|G|9, 8OVE|1|BG|U|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_112 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2509
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|BG|U|7
8OVE|1|BG|U|8
8OVE|1|BG|G|9
8OVE|1|BG|U|10
8OVE|1|BG|G|11
8OVE|1|BG|A|12
8OVE|1|BG|A|13
8OVE|1|BG|G|14
8OVE|1|BG|G|15
8OVE|1|BG|G|16
8OVE|1|BG|A|17
Current chains
- Chain BG
- SrRNA 2
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BR
- 60S ribosomal protein L17, putative
Coloring options: