HL_8OVE_121
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- (PSU)UACACGACAACG
- Length
- 13 nucleotides
- Bulged bases
- 8OVE|1|BB|A|1080, 8OVE|1|BB|C|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_121 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1978
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8OVE|1|BB|PSU|1076
8OVE|1|BB|U|1077
8OVE|1|BB|A|1078
8OVE|1|BB|C|1079
8OVE|1|BB|A|1080
8OVE|1|BB|C|1081
8OVE|1|BB|G|1082
8OVE|1|BB|A|1083
8OVE|1|BB|C|1084
8OVE|1|BB|A|1085
8OVE|1|BB|A|1086
8OVE|1|BB|C|1087
8OVE|1|BB|G|1088
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 60S ribosomal protein L10, putative
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bd
- 60S ribosomal protein L29
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