HL_8OZ0_005

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGACUC

Length

7 nucleotides

Bulged bases

8OZ0|1|W|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_005 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3401

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OZ0|1|W|G|289
8OZ0|1|W|U|290
8OZ0|1|W|G|291
8OZ0|1|W|A|292
8OZ0|1|W|C|293
8OZ0|1|W|U|294
8OZ0|1|W|C|295

Current chains

Chain W

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S11

Chain Y

40S ribosomal protein S4, X isoform