HL_8OZ0_006

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8OZ0|1|W|C|324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_006 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2406

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OZ0|1|W|C|322
8OZ0|1|W|C|323
8OZ0|1|W|C|324
8OZ0|1|W|C|325
8OZ0|1|W|C|326
8OZ0|1|W|G|327
8OZ0|1|W|U|328
8OZ0|1|W|G|329

Current chains

Chain W

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6