HL_8OZ0_018
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCCGAGCCG
- Length
- 9 nucleotides
- Bulged bases
- 8OZ0|1|W|G|836, 8OZ0|1|W|A|837, 8OZ0|1|W|G|838, 8OZ0|1|W|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OZ0_018 not in the Motif Atlas
- Geometric match to HL_8C3A_018
- Geometric discrepancy: 0.3751
- The information below is about HL_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84570.1
- Basepair signature
- cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8OZ0|1|W|C|833
8OZ0|1|W|C|834
8OZ0|1|W|C|835
8OZ0|1|W|G|836
8OZ0|1|W|A|837
8OZ0|1|W|G|838
8OZ0|1|W|C|839
8OZ0|1|W|C|840
8OZ0|1|W|G|841
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain I
- Eukaryotic translation initiation factor 3 subunit B
- Chain Y
- 40S ribosomal protein S4, X isoform
- Chain e
- 40S ribosomal protein S24
Coloring options: