HL_8OZ0_030

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8OZ0|1|W|C|1419, 8OZ0|1|W|G|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_030 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3529

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8OZ0|1|W|C|1416
8OZ0|1|W|C|1417
8OZ0|1|W|C|1418
8OZ0|1|W|C|1419
8OZ0|1|W|G|1420
8OZ0|1|W|A|1421
8OZ0|1|W|G|1422
8OZ0|1|W|C|1423
8OZ0|1|W|G|1424

Current chains

Chain W

18S rRNA

Nearby chains

Chain g

40S ribosomal protein S16

Chain l

40S ribosomal protein S19