HL_8OZ0_031

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_031 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3493

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8OZ0|1|W|C|1460
8OZ0|1|W|G|1461
8OZ0|1|W|U|1462
8OZ0|1|W|U|1463
8OZ0|1|W|C|1464
8OZ0|1|W|A|1465
8OZ0|1|W|G|1466

Current chains

Chain W

18S rRNA

Nearby chains

Chain k

Receptor of activated protein C kinase 1

Chain v

40S ribosomal protein S17