HL_8P03_041

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P03_041 not in the Motif Atlas

Homologous match to HL_8CRE_209

Geometric discrepancy: 0.5985

The information below is about HL_8CRE_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99324.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P03|1|2|U|881
8P03|1|2|A|882
8P03|1|2|U|883
8P03|1|2|U|884
8P03|1|2|U|885
8P03|1|2|U|886
8P03|1|2|G|887
8P03|1|2|U|888
8P03|1|2|U|889
8P03|1|2|G|890
8P03|1|2|G|891
8P03|1|2|U|892
8P03|1|2|U|893
8P03|1|2|U|894
8P03|1|2|U|895
8P03|1|2|C|896
8P03|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain N

40S ribosomal protein S11