HL_8P09_009

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8P09|1|2|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_009 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1954

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P09|1|2|G|279
8P09|1|2|G|280
8P09|1|2|U|281
8P09|1|2|G|282
8P09|1|2|A|283
8P09|1|2|C|284
8P09|1|2|U|285
8P09|1|2|C|286

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain N

40S ribosomal protein S11