HL_8P09_012

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_012 not in the Motif Atlas

Homologous match to HL_8C3A_200

Geometric discrepancy: 0.1339

The information below is about HL_8C3A_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8P09|1|2|U|406
8P09|1|2|C|407
8P09|1|2|A|408
8P09|1|2|G|409
8P09|1|2|G|410
8P09|1|2|G|411

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S2

Chain L

40S ribosomal protein S9

Chain N

40S ribosomal protein S11

Chain Y

Ribosomal protein S15a

Chain Z

40S ribosomal protein S23