HL_8P09_031

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8P09|1|2|U|1296, 8P09|1|2|G|1298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_031 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1977

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8P09|1|2|A|1291
8P09|1|2|U|1292
8P09|1|2|U|1293
8P09|1|2|G|1294
8P09|1|2|A|1295
8P09|1|2|U|1296
8P09|1|2|A|1297
8P09|1|2|G|1298
8P09|1|2|C|1299
8P09|1|2|U|1300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein uS19

Chain e

40S ribosomal protein S29

Chain f

ribosomal protein eS31