HL_8P2F_076
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8P2F|1|F|C|16, 8P2F|1|F|G|18, 8P2F|1|F|G|19, 8P2F|1|F|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P2F_076 not in the Motif Atlas
- Homologous match to HL_5E81_211
- Geometric discrepancy: 0.1403
- The information below is about HL_5E81_211
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8P2F|1|F|C|13
8P2F|1|F|A|14
8P2F|1|F|G|15
8P2F|1|F|C|16
8P2F|1|F|C|17
8P2F|1|F|U|17|||A
8P2F|1|F|G|18
8P2F|1|F|G|19
8P2F|1|F|U|20
8P2F|1|F|A|21
8P2F|1|F|G|22
Current chains
- Chain F
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 50S ribosomal protein L5
Coloring options: