HL_8P2G_046

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

8P2G|1|A|A|1807, 8P2G|1|A|U|1808, 8P2G|1|A|C|1809, 8P2G|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_046 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0456

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8P2G|1|A|U|1804
8P2G|1|A|U|1805
8P2G|1|A|U|1806
8P2G|1|A|A|1807
8P2G|1|A|U|1808
8P2G|1|A|C|1809
8P2G|1|A|A|1810
8P2G|1|A|A|1811
8P2G|1|A|A|1812
8P2G|1|A|A|1813
8P2G|1|A|A|1814

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2