HL_8P2G_106

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

8P2G|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_106 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1725

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8P2G|1|A|G|428
8P2G|1|A|C|429
8P2G|1|A|A|430
8P2G|1|A|C|431
8P2G|1|A|G|432
8P2G|1|A|U|433
8P2G|1|A|G|434
8P2G|1|A|A|435
8P2G|1|A|A|436
8P2G|1|A|A|437
8P2G|1|A|U|438

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA