HL_8P2H_111

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

8P2H|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_111 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.166

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8P2H|1|A|G|428
8P2H|1|A|C|429
8P2H|1|A|A|430
8P2H|1|A|C|431
8P2H|1|A|G|432
8P2H|1|A|U|433
8P2H|1|A|G|434
8P2H|1|A|A|435
8P2H|1|A|A|436
8P2H|1|A|A|437
8P2H|1|A|U|438

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA