HL_8P2K_005

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8P2K|1|A2|U|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1849

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P2K|1|A2|G|289
8P2K|1|A2|G|290
8P2K|1|A2|U|291
8P2K|1|A2|G|292
8P2K|1|A2|A|293
8P2K|1|A2|C|294
8P2K|1|A2|U|295
8P2K|1|A2|C|296

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11