HL_8P2K_017

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_017 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.392

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8P2K|1|A2|U|886
8P2K|1|A2|A|887
8P2K|1|A2|U|888
8P2K|1|A2|U|889
8P2K|1|A2|U|890
8P2K|1|A2|U|891
8P2K|1|A2|G|892
8P2K|1|A2|U|893
8P2K|1|A2|U|894
8P2K|1|A2|G|895
8P2K|1|A2|G|896
8P2K|1|A2|U|897
8P2K|1|A2|U|898
8P2K|1|A2|U|899
8P2K|1|A2|U|900
8P2K|1|A2|C|901
8P2K|1|A2|G|902

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11