HL_8P2K_027

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

8P2K|1|A2|U|1372

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_027 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.3325

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P2K|1|A2|G|1367
8P2K|1|A2|PSU|1368
8P2K|1|A2|U|1369
8P2K|1|A2|A|1370
8P2K|1|A2|A|1371
8P2K|1|A2|U|1372
8P2K|1|A2|U|1373
8P2K|1|A2|C|1374

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Aq

40S ribosomal protein eS17