HL_8P2K_045

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8P2K|1|B5|G|294, 8P2K|1|B5|A|295, 8P2K|1|B5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_045 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1325

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P2K|1|B5|C|289
8P2K|1|B5|U|290
8P2K|1|B5|U|291
8P2K|1|B5|G|292
8P2K|1|B5|G|293
8P2K|1|B5|G|294
8P2K|1|B5|A|295
8P2K|1|B5|A|296
8P2K|1|B5|U|297
8P2K|1|B5|G|298

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Bo

eL42