HL_8P4V_001
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8P4V|1|1|A|40, 8P4V|1|1|A|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_001 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.0812
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8P4V|1|1|U|38
8P4V|1|1|A|39
8P4V|1|1|A|40
8P4V|1|1|G|41
8P4V|1|1|C|42
8P4V|1|1|A|43
8P4V|1|1|U|44
8P4V|1|1|A|45
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AP
- 60S ribosomal protein L42-A
- Chain t
- 60S ribosomal protein L13-A
- Chain v
- 60S ribosomal protein L15-A
Coloring options: